PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6726s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 389aa    MW: 42885.9 Da    PI: 8.2207
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6726s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-1599148355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Araha.6726s0001.1.p  99 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 148
                          9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.144162IPR001471AP2/ERF domain
SMARTSM003805.2E-13368IPR001471AP2/ERF domain
PfamPF008472.0E-4454IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-10463IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-8562IPR001471AP2/ERF domain
CDDcd000183.51E-12564No hitNo description
SuperFamilySSF541715.04E-1897157IPR016177DNA-binding domain
CDDcd000186.89E-2497158No hitNo description
PROSITE profilePS5103219.50698156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1898156IPR001471AP2/ERF domain
SMARTSM003801.5E-3298162IPR001471AP2/ERF domain
PfamPF008479.0E-1099148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCTYRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEDK AARSYDLAAL KYWGPSTTTN  60
FPITNYEKEV EEMKHMTRQE FVAAIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  120
NKDLYLGTFS TEEEAAEAYD IAAIKFRGLN AVTNFEINRY DVKAILESST LPIGGGAAKR  180
LKEAQALESS RKREAEMIAL GSSFQYGGGS STGSGSSSSR LQLQPYPLSI QQPLEPFLSL  240
QNNDISHYNN NAHDSSSFNH HSYIQTQLHL HQQTNNYLQQ QSSQNSQQLY NAYLHSNPAL  300
LHGLVSTSIV DNNNNNGGSS GSYNTAAFLG NHGIGIGSSS TVGSAEEFPT VKTDYDMPSS  360
DGTGGYSGWT GESVQGSNPG GVFTMWNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5065490.0AY506549.1 Arabidopsis thaliana PLETHORA1 (PLT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883273.10.0hypothetical protein ARALYDRAFT_898520
SwissprotQ5YGP80.0PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLD7KZX20.0D7KZX2_ARALL; Putative uncharacterized protein
STRINGscaffold_302490.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30152767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.10.0AP2 family protein